Genomics

genomics_expertise_illustration

Keywords:

  • Next generation sequencing (NGS)
  • Cardio-metabolic diseases
  • Congenital disorders
  • Immuno-oncology

analysis and interpretation of the following assay types:

  • Genomics
    • Whole genome / Exome sequencing [Variant calling, Copy number]
    • Sequence capture
    • Regulome sequencing
    • SNP microarrays [genotyping and copy number]
  • Epigenomics
    • ChIP-seq
    • ATAC-seq
    • Whole genome bisulfite sequencing
    • Methylation microarrays
  • Transcriptomics
    • RNA-seq [Alternative splicing, gene expression]
    • CAGE
    • Expression microarrays

Programming languages:

  • Perl, R, Python

Point of contact:

  • Dr Santosh Atanur, Dr Matthias Futschik, Dr Zhangyi He
  • Previous members: Dr Paul Blakeley, Dr Paul Blakeley